rxiv module
- class pygetpapers.repository.rxiv.Rxiv(api='biorxiv')
Bases:
RepositoryInterfaceBiorxiv and Medrxiv repositories
At present (2022-03) the API appears only to support date searches. The rxivist system is layered on top and supports fuller queries
- apipaperdownload(query_namespace)
Takes in the query_namespace object as the parameter and runs the query search for given search parameters.
- Parameters
query_namespace (dict) – pygetpaper’s namespace object containing the queries from argparse
- download_and_save_results(query, cutoff_size, source, update=False, makecsv=False, makexml=False, makehtml=False)
- make_request_add_papers(interval, cursor_mark, source, total_number_of_results, total_papers_list)
- make_request_url_for_rxiv(cursor_mark, interval, source)
- make_xml_for_rxiv(dict_of_papers, xml_identifier, paper_id_identifier, filename)
- noexecute(query_namespace)
Takes in the query_namespace object as the parameter and runs the query search for given search parameters but only prints the output and not write to disk.
- Parameters
query_namespace (dict) – pygetpaper’s namespace object containing the queries from argparse
- rxiv(query, cutoff_size, source='biorxiv', update=None, makecsv=False, makehtml=False)
- rxiv_update(interval, cutoff_size, source='biorxiv', update=None, makecsv=False, makexml=False, makehtml=False)
- update(query_namespace)
If there is a previously existing corpus, this function reads in the ‘cursor mark’ from the previous run, increments in, and adds new papers for the given parameters to the existing corpus.
- Parameters
query_namespace (dict) – pygetpaper’s namespace object containing the queries from argparse