Index

A

add_terms_from_file() (pygetpapers.pygetpapers.ApiPlugger method) apipaperdownload() (pygetpapers.repository.arxiv.Arxiv method) (pygetpapers.repository.crossref.CrossRef method) (pygetpapers.repository.europe_pmc.EuropePmc method) (pygetpapers.repository.rxiv.Rxiv method) (pygetpapers.repository.rxivist.Rxivist method) (pygetpapers.repositoryinterface.RepositoryInterface method)

ApiPlugger (class in pygetpapers.pygetpapers) Arxiv (class in pygetpapers.repository.arxiv) arxiv() (pygetpapers.repository.arxiv.Arxiv method)

B

build_and_send_query() (pygetpapers.repository.europe_pmc.EuropePmc method)

buildquery() (pygetpapers.repository.europe_pmc.EuropePmc static method)

C

check_if_content_is_zip() (pygetpapers.download_tools.DownloadTools method) check_or_make_directory() (pygetpapers.download_tools.DownloadTools static method) check_query_logic_and_run() (pygetpapers.pygetpapers.ApiPlugger method)

create_argparser() (pygetpapers.pygetpapers.Pygetpapers method) create_parameters_for_paper_download() (pygetpapers.repository.europe_pmc.EuropePmc static method) CrossRef (class in pygetpapers.repository.crossref) crossref() (pygetpapers.repository.crossref.CrossRef method)

D

download_and_save_results() (pygetpapers.repository.rxiv.Rxiv method) (pygetpapers.repository.rxivist.Rxivist method)

download_pdf() (pygetpapers.repository.arxiv.Arxiv method) DownloadTools (class in pygetpapers.download_tools) dumps_json_to_given_path() (pygetpapers.download_tools.DownloadTools static method)

E

EuropePmc (class in pygetpapers.repository.europe_pmc)

extract_zip_files() (pygetpapers.download_tools.DownloadTools method)

G

generate_logger() (pygetpapers.pygetpapers.Pygetpapers method) get_metadata_results_file() (pygetpapers.download_tools.DownloadTools method) get_parent_directory() (pygetpapers.download_tools.DownloadTools method) get_request_endpoint_for_citations() (pygetpapers.download_tools.DownloadTools method) get_request_endpoint_for_references() (pygetpapers.download_tools.DownloadTools method)

get_request_endpoint_for_xml() (pygetpapers.download_tools.DownloadTools method) get_supplementary_metadata() (pygetpapers.repository.europe_pmc.EuropePmc method) get_urls_to_write_to() (pygetpapers.repository.europe_pmc.EuropePmc method) get_version() (pygetpapers.download_tools.DownloadTools static method) gets_result_dict_for_query() (pygetpapers.download_tools.DownloadTools method) getsupplementaryfiles() (pygetpapers.download_tools.DownloadTools method)

H

handle_creation_of_csv_html_xml() (pygetpapers.download_tools.DownloadTools method)

I

initiate_crossref() (pygetpapers.repository.crossref.CrossRef method)

M

main() (in module pygetpapers.pygetpapers) make_citations() (pygetpapers.download_tools.DownloadTools method) make_csv_for_dict() (pygetpapers.download_tools.DownloadTools method) make_html_for_dict() (pygetpapers.download_tools.DownloadTools method) make_html_from_dataframe() (pygetpapers.download_tools.DownloadTools method) make_html_from_dict() (pygetpapers.repository.europe_pmc.EuropePmc method) make_references() (pygetpapers.download_tools.DownloadTools method) make_request_add_papers() (pygetpapers.repository.rxiv.Rxiv method) (pygetpapers.repository.rxivist.Rxivist method) make_request_url_for_rxiv() (pygetpapers.repository.rxiv.Rxiv method) make_xml_for_dict() (pygetpapers.download_tools.DownloadTools method)

make_xml_for_rxiv() (pygetpapers.repository.rxiv.Rxiv method) makes_output_directory() (pygetpapers.pygetpapers.Pygetpapers static method) module pygetpapers.download_tools pygetpapers.pygetpapers pygetpapers.repository.arxiv pygetpapers.repository.crossref pygetpapers.repository.europe_pmc pygetpapers.repository.rxiv pygetpapers.repository.rxivist pygetpapers.repositoryinterface

N

noexecute() (pygetpapers.repository.arxiv.Arxiv static method) (pygetpapers.repository.crossref.CrossRef method) (pygetpapers.repository.europe_pmc.EuropePmc method) (pygetpapers.repository.rxiv.Rxiv method) (pygetpapers.repository.rxivist.Rxivist method) (pygetpapers.repositoryinterface.RepositoryInterface method)

P

parse_request_handler() (pygetpapers.download_tools.DownloadTools method) post_query() (pygetpapers.download_tools.DownloadTools method) Pygetpapers (class in pygetpapers.pygetpapers) pygetpapers.download_tools module pygetpapers.pygetpapers module pygetpapers.repository.arxiv module

pygetpapers.repository.crossref module pygetpapers.repository.europe_pmc module pygetpapers.repository.rxiv module pygetpapers.repository.rxivist module pygetpapers.repositoryinterface module

Q

queries_the_url_and_writes_response_to_destination() (pygetpapers.download_tools.DownloadTools static method)

query() (pygetpapers.repository.europe_pmc.EuropePmc method)

R

readjsondata() (pygetpapers.download_tools.DownloadTools static method) removing_added_attributes_from_dictionary() (pygetpapers.download_tools.DownloadTools static method) RepositoryInterface (class in pygetpapers.repositoryinterface) restart() (pygetpapers.repository.europe_pmc.EuropePmc method) run_command() (pygetpapers.pygetpapers.Pygetpapers method) run_eupmc_query_and_get_metadata() (pygetpapers.repository.europe_pmc.EuropePmc method)

runs_pygetpapers_for_given_args() (pygetpapers.pygetpapers.Pygetpapers method) Rxiv (class in pygetpapers.repository.rxiv) rxiv() (pygetpapers.repository.rxiv.Rxiv method) rxiv_update() (pygetpapers.repository.rxiv.Rxiv method) Rxivist (class in pygetpapers.repository.rxivist) rxivist() (pygetpapers.repository.rxivist.Rxivist method)

S

send_post_request() (pygetpapers.repository.rxivist.Rxivist method) set_up_config_variables() (pygetpapers.download_tools.DownloadTools method)

setup_api_support_variables() (pygetpapers.pygetpapers.ApiPlugger method) setup_config_file() (pygetpapers.download_tools.DownloadTools method)

U

update() (pygetpapers.repository.arxiv.Arxiv static method) (pygetpapers.repository.crossref.CrossRef method) (pygetpapers.repository.europe_pmc.EuropePmc method) (pygetpapers.repository.rxiv.Rxiv method) (pygetpapers.repository.rxivist.Rxivist method) (pygetpapers.repositoryinterface.RepositoryInterface method)

url_encode_id() (pygetpapers.download_tools.DownloadTools static method)

W

write_configuration_file() (pygetpapers.pygetpapers.Pygetpapers static method) write_logfile() (pygetpapers.pygetpapers.Pygetpapers method)

write_metadata_json_from_arxiv_dict() (pygetpapers.repository.arxiv.Arxiv method) write_or_append_to_csv() (pygetpapers.download_tools.DownloadTools static method) writexml() (pygetpapers.download_tools.DownloadTools method)